Molecular epidemiology of Mycobacterium tuberculosis in Brazil before the whole genome sequencing era: a literature review
Mem. Inst. Oswaldo Cruz; 116 (), 2021
Publication year: 2021
Molecular-typing can help in unraveling epidemiological scenarios and improvement for disease control strategies. A literature review of Mycobacterium tuberculosis transmission in Brazil through genotyping on 56 studies published from 1996-2019 was performed. The clustering rate for mycobacterial interspersed repetitive units - variable tandem repeats (MIRU-VNTR) of 1,613 isolates were: 73%, 33% and 28% based on 12, 15 and 24-loci, respectively; while for RFLP-IS6110 were: 84% among prison population in Rio de Janeiro, 69% among multidrug-resistant isolates in Rio Grande do Sul, and 56.2% in general population in São Paulo. These findings could improve tuberculosis (TB) surveillance and set up a solid basis to build a database of Mycobacterium genomes.
Técnicas de Tipificación Bacteriana, Brasil/epidemiología, Genotipo, Repeticiones de Minisatélite/genética, Epidemiología Molecular, Mycobacterium tuberculosis/genética, Mycobacterium tuberculosis/aislamiento & purificación, Polimorfismo de Longitud del Fragmento de Restricción/genética, Secuenciación Completa del Genoma